
In September 1939, World War II began, and Podbrodzie was occupied by the Soviet Union. In October 1939, the town was allotted to Lithuania, but in 1940 Lithuania itself was annexed by the USSR, and Podbrodzie came back under Soviet control. In June 1941, the Soviet-German War broke out, and Podbrodzie was occupied by the Wehrmacht. During the interregnum period, after the departure of the Soviets and before the arrival of the Germans, the anti-Soviet Lithuanian partisans (also known as the baltaraiščiai, "white armbanders") were the only power in the town. They shot eight Jews as suspected Soviet collaborators. Later, in July 1941, under German rule, they murdered some eighty additional Jews. At the end of the summer, a ghetto was set up in Podbrodzie, and the Jews who had survived the first massacres were concentrated there.
According to eyewitness accounts, the ghetto Jews were warned by a friendly Pole of the impending resettlement of all the inmates to the so-called "Poligon" – a camp at the edge of Nowe Święciany, some 25 kilometers northeast of Podbrodzie. This resettlement was unequivocally interpreted as a prelude to mass murder. Dozens of Jews tried to escape or hide, but only a few succeeded. On September 26, 1941, the ghetto inmates were escorted to the "Poligon". On October 7-8, after the police had brought most of the would-be escapees to the camp, the Jews of Podbrodzie – together with those of Święciany, Nowe Święciany, Ignalino, and other settlements – were shot dead at the "Poligon".
Podbrodzie was liberated by the Red Army in July 1944.
| names.headerTitles.lastName | names.headerTitles.firstName | names.headerTitles.birthYear | names.headerTitles.placeOfResidence | names.headerTitles.fate |
|---|---|---|---|---|
| Abramovich | Avraham | Podbrodzie, Poland | murdered | |
| Abramovich | Bentzion | Podbrodzie, Poland | murdered | |
| Abramovich | Etel | Podbrodzie, Poland | murdered | |
| Abramovich | Leib | Podbrodzie, Poland | murdered | |
| Abramovitz | Benzion | 1906 | Podbrodze, Poland | murdered |
| Alakser | Khaim | Podbrodzie, Poland | murdered | |
| Alakser | Mordekhai | Podbrodzie, Poland | murdered | |
| Alakser | Taibe | Podbrodzie, Poland | murdered | |
| Alakser | Yosef | Podbrodzie, Poland | murdered | |
| Arman | Beile | Podbrodzie, Poland | murdered | |
| Arman | Chana | Podbrodzie, Poland | murdered | |
| Arman | Leib | Podbrodzie, Poland | murdered | |
| Arman | Sender | Podbrodzie, Poland | murdered | |
| Aronovitz | Zalman | Podbereze, Poland | murdered | |
| Astrakhan | First name unknown | Podbrodzie, Poland | murdered | |
| Astrakhan | First name unknown | Podbrodzie, Poland | murdered | |
| Barin Brin | Khana | Podbrodzie, Poland | murdered | |
| Barin Brin | Sara | 1900 | Podbrodzie, Poland | murdered |
| Barkan | Ryvka | 1903 | Podberezhye, Poland | murdered |
| Barkovich | Barka | 1899 | Podberezhye, Poland | murdered |
| Bavarski | Batia | Podbrodzie, Poland | murdered | |
| Bavarski | Batia | Podbrodzie, Poland | murdered | |
| Bavarski | Ber | Podbrodzie, Poland | murdered | |
| Bavarski | Chaia Sara | Podbrodzie, Poland | murdered | |
| Bavarski | Ester | Podbrodzie, Poland | murdered | |
| Bavarski | Faive | Podbrodzie, Poland | murdered | |
| Bavarski | Feige | Podbrodzie, Poland | murdered | |
| Bavarski | Feige | Podbrodzie, Poland | murdered | |
| Bavarski | Feivke | 1905 | Podbrodzie, Poland | murdered |
| Bavarski | Gutman | Podbrodzie, Poland | murdered | |
| Bavarski | Hersh | Podbrodzie, Poland | murdered | |
| Bavarski | Hirsch | 1933 | Podbrodzie, Poland | murdered |
| Bavarski | Lea | Podbrodzie, Poland | murdered | |
| Bavarski | Nute | Podbrodzie, Poland | murdered | |
| Bavarski | Pese | Podbrodzie, Poland | murdered | |
| Bavarski | Shlama | Podbrodzie, Poland | murdered | |
| Bavarski | Shlama | Podbrodzie, Poland | murdered | |
| Bavarski | Shmuel | Podbrodzie, Poland | murdered | |
| Bavarski | Yisrael | Podbrodzie, Poland | murdered | |
| Bavarski | Yisrael | 1906 | Podbrodzie, Poland | survived |
| Bavarsky | Avraham | 1931 | Podbrodzie, Poland | murdered |
| Bavarsky | Feige | 1880 | Podbrodzie, Poland | murdered |
| Bavarsky | Israel Baruch | 1876 | Podbrodze, Poland | murdered |
| Bavarsky | Notel | 1875 | Podbrodzie, Poland | murdered |
| Bavarsky | Yosef | 1910 | Podbrodzie, Poland | murdered |
| Bawarska | Lea | 1905 | Podbrodze, Poland | murdered |
| Bawarska | Sara | 1858 | Podbrodzie, Poland | murdered |
| Bawarski | Bejla | 1911 | Podbrodz, Poland | murdered |
| Bawarski | Berko Dov Yehuda | 1893 | Podbrodzie, Poland | murdered |
| Bawarski | Chaim | Podbrodzie, Poland | murdered |